So, for whatever the reason (cant think of anything Ive done to trigger it) the MFDs is once again swapped.
More so, if trying to deal with it by setting them up in ship using the SWAP command just doesnt work, things just become more and more weird trying to configure the various modes.

So I saved my config folder, reinstalled, merged the old config folder and find that the problem is carried over to the new install.

Can someone point me to what file and what code is actually setting the positions of the MFDs?