Ahh right. RHS, ACE and TFAR could not be 'repackaged' as the other stuff was. So if you rename each of those to @<Original_Name>_SHQ that should solve the problem.
I know it would be an issue if you were running a newer (or older) version of those mods and things might get confused.
That's what I did ... renamed @ace (to @ace_SHQ), @RHS* and @task_force_radio (same pattern)