Ok, for some reason I could not shape the axis of the CH Pedals. The button was grayed out. I selected a Warthog axis first and the button became active. Then I selected the Pedals and the button remained active. Set a 25% deadzone and the problem is resolved.
Thanks guys
Ghost,
I had all my axis working at one point in JF-18 but something changed and I could not get my throttle to stop inputting rudder commands.
Since the rudder is next to pointless anyway in that game, I just stopped using it all together and was able to enjoy the game without issue.
Thanks again!