I'll second that!

A very long time no see, but it's great to see you here again Marco!

I'm guessing, but are you using 1.28D, or 1.28D 1024?
The 1024 version uses 1024x768 screens. The original version of 1.28D only uses the original 800x600 screens, which cause problems with modern cards.
In any case, you should be using 1.28E, which you can get from here:
http://www.users.on.net/~pam_biddell/1.28E_Install/128eInstallPR.htm
Please note, you only need to copy your original disk to your HD, DO NOT INSTALL FROM YOUR CD! You do not need to patch it, as 1.28E has all the new files in it already.
Download the three files and unpack into the EAW folder. Edit your ini file and set graphics to 1024x768 and try running the game. You can set the game to higher res any time you like.
If your having problems flying, then you might need the windower program, but we really need more details of your problems.
Read more here:
http://simhq.com/forum/ubbthreads.php/topics/3085348/1/EAW_Mod_Newbie_Help.html